Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Gm16215-201ENSMUST00000161990 637 ntBASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Gm24420-201ENSMUST00000176676 59 ntBASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Mir6977-201ENSMUST00000184960 64 ntBASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Gm9797-201ENSMUST00000052902 613 ntBASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Gm3365-201ENSMUST00000216296 1480 ntBASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Upf3bQ3ULL6 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Gm8337-201ENSMUST00000187358 1938 ntBASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Gm15240-201ENSMUST00000118156 720 ntBASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Gm17795-201ENSMUST00000214505 757 ntBASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 AC124732.1-201ENSMUST00000221551 910 ntBASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Hist1h2al-201ENSMUST00000091708 339 ntBASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Upf3bQ3ULL6 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Gm18905-201ENSMUST00000205454 928 ntBASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Gm7730-201ENSMUST00000212486 454 ntBASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Upf3bQ3ULL6 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms