Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC16.22■□□□□ 0.19
Limch1Q3UH68 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Limch1Q3UH68 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Gm3809-201ENSMUST00000180973 1006 ntBASIC16.21■□□□□ 0.19
Limch1Q3UH68 Gm29741-201ENSMUST00000192667 421 ntBASIC16.21■□□□□ 0.19
Limch1Q3UH68 Gm18187-201ENSMUST00000196476 984 ntBASIC16.21■□□□□ 0.19
Limch1Q3UH68 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Gm45195-201ENSMUST00000205597 1008 ntBASIC16.21■□□□□ 0.19
Limch1Q3UH68 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 AC132467.2-202ENSMUST00000227726 559 ntBASIC16.21■□□□□ 0.19
Limch1Q3UH68 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Matn2-206ENSMUST00000228570 2798 ntBASIC16.21■□□□□ 0.19
Limch1Q3UH68 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Limch1Q3UH68 Gm37133-201ENSMUST00000192705 1922 ntBASIC16.21■□□□□ 0.19
Limch1Q3UH68 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Limch1Q3UH68 AC114543.1-201ENSMUST00000226451 1558 ntBASIC16.21■□□□□ 0.18
Limch1Q3UH68 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Limch1Q3UH68 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Limch1Q3UH68 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Limch1Q3UH68 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Limch1Q3UH68 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms