Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rnf40Q3U319 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rnf40Q3U319 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rnf40Q3U319 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Rnf40Q3U319 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rnf40Q3U319 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC14.33□□□□□ -0.11
Rnf40Q3U319 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rnf40Q3U319 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC14.33□□□□□ -0.12
Rnf40Q3U319 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Xlr-203ENSMUST00000114810 984 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Gm16701-202ENSMUST00000180995 934 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Gm27742-201ENSMUST00000184667 60 ntBASIC14.33□□□□□ -0.12
Rnf40Q3U319 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Gm45359-201ENSMUST00000210635 427 ntBASIC14.33□□□□□ -0.12
Rnf40Q3U319 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 CT025561.1-201ENSMUST00000214972 674 ntBASIC14.33□□□□□ -0.12
Rnf40Q3U319 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Xlr-201ENSMUST00000067763 1032 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf40Q3U319 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Gm43463-201ENSMUST00000195967 1803 ntBASIC14.32□□□□□ -0.12
Rnf40Q3U319 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Csnk1a1-208ENSMUST00000167187 1222 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Gm27741-201ENSMUST00000185060 237 ntBASIC14.32□□□□□ -0.12
Rnf40Q3U319 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 B230112I24Rik-201ENSMUST00000203953 1229 ntBASIC14.32□□□□□ -0.12
Rnf40Q3U319 AC147366.1-201ENSMUST00000227671 852 ntBASIC14.32□□□□□ -0.12
Rnf40Q3U319 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Gm14667-201ENSMUST00000119448 1350 ntBASIC14.32□□□□□ -0.12
Rnf40Q3U319 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf40Q3U319 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms