Protein–RNA interactions for Protein: Q08624

Hoxc4, Homeobox protein Hox-C4, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc4Q08624 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Gm6091-201ENSMUST00000098307 165 ntBASIC13.2□□□□□ -0.3
Hoxc4Q08624 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hoxc4Q08624 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Mir7085-201ENSMUST00000184353 66 ntBASIC13.19□□□□□ -0.3
Hoxc4Q08624 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC13.19□□□□□ -0.3
Hoxc4Q08624 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Hoxc4Q08624 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Gm13050-201ENSMUST00000122149 1345 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Zscan30-202ENSMUST00000224144 1458 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Mir1982-201ENSMUST00000157368 74 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Gm8835-201ENSMUST00000173096 1169 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Gm29127-201ENSMUST00000188304 517 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Gm29608-201ENSMUST00000190444 463 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Gm42442-201ENSMUST00000197951 1133 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 AC153962.4-201ENSMUST00000217878 242 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 AC173210.1-201ENSMUST00000222341 1131 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 AC167013.2-201ENSMUST00000228520 2684 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC13.18□□□□□ -0.3
Hoxc4Q08624 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC13.18□□□□□ -0.3
Hoxc4Q08624 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hoxc4Q08624 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hoxc4Q08624 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms