Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sox9Q04887 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sox9Q04887 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sox9Q04887 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Sox9Q04887 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sox9Q04887 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Sox9Q04887 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Gm2606-201ENSMUST00000100754 1002 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sox9Q04887 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC14.16□□□□□ -0.14
Sox9Q04887 Gm12537-201ENSMUST00000119266 1002 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm12070-201ENSMUST00000119551 1002 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm12671-201ENSMUST00000119978 1002 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm13292-201ENSMUST00000120014 1000 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm12201-201ENSMUST00000120657 1234 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm11658-201ENSMUST00000120913 1008 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC14.16□□□□□ -0.14
Sox9Q04887 Gm10359-201ENSMUST00000180167 1002 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm12033-201ENSMUST00000180654 1002 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm5559-201ENSMUST00000180755 1002 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm2467-201ENSMUST00000182266 1010 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm6981-201ENSMUST00000182467 1008 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sox9Q04887 Gm43830-201ENSMUST00000198760 1067 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC14.16□□□□□ -0.14
Sox9Q04887 Gm7293-201ENSMUST00000216682 1007 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sox9Q04887 Gm10584-201ENSMUST00000207036 2628 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.16□□□□□ -0.14
Sox9Q04887 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
Sox9Q04887 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox9Q04887 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC14.15□□□□□ -0.14
Sox9Q04887 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Gm14017-201ENSMUST00000121934 386 ntBASIC14.15□□□□□ -0.14
Sox9Q04887 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC14.15□□□□□ -0.14
Sox9Q04887 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Gm43947-201ENSMUST00000203019 959 ntBASIC14.15□□□□□ -0.14
Sox9Q04887 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Gm10146-201ENSMUST00000072739 309 ntBASIC14.15□□□□□ -0.14
Sox9Q04887 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Sox9Q04887 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Sox9Q04887 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Sox9Q04887 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox9Q04887 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Sox9Q04887 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.15
Sox9Q04887 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC14.14□□□□□ -0.15
Sox9Q04887 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Sox9Q04887 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox9Q04887 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Sox9Q04887 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms