Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC12.96□□□□□ -0.33
Sox6P40645 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Sox6P40645 Gm8396-201ENSMUST00000057361 823 ntBASIC12.96□□□□□ -0.33
Sox6P40645 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Sox6P40645 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Sox6P40645 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
Sox6P40645 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sox6P40645 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Sox6P40645 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sox6P40645 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
Sox6P40645 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sox6P40645 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Sox6P40645 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sox6P40645 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sox6P40645 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Sox6P40645 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sox6P40645 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Sox6P40645 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Sox6P40645 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
Sox6P40645 Grk6-205ENSMUST00000224653 2976 ntBASIC12.95□□□□□ -0.34
Sox6P40645 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC12.95□□□□□ -0.34
Sox6P40645 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Sox6P40645 Gm14042-201ENSMUST00000120139 833 ntBASIC12.95□□□□□ -0.34
Sox6P40645 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Gm10253-201ENSMUST00000194270 940 ntBASIC12.95□□□□□ -0.34
Sox6P40645 Gm18049-201ENSMUST00000208909 581 ntBASIC12.95□□□□□ -0.34
Sox6P40645 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC12.95□□□□□ -0.34
Sox6P40645 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Sox6P40645 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Sox6P40645 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC12.95□□□□□ -0.34
Sox6P40645 Gm9252-201ENSMUST00000172364 1602 ntBASIC12.95□□□□□ -0.34
Sox6P40645 Gm37644-201ENSMUST00000192190 2270 ntBASIC12.95□□□□□ -0.34
Sox6P40645 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sox6P40645 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.94□□□□□ -0.34
Sox6P40645 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Sox6P40645 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Sox6P40645 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Sox6P40645 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Gm22065-201ENSMUST00000103753 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm22066-201ENSMUST00000103761 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm24932-201ENSMUST00000103763 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm24115-201ENSMUST00000103799 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm22190-201ENSMUST00000103827 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm22191-201ENSMUST00000103831 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm24721-201ENSMUST00000103849 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm28018-201ENSMUST00000103869 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm26399-201ENSMUST00000103937 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC12.94□□□□□ -0.34
Sox6P40645 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC12.94□□□□□ -0.34
Sox6P40645 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Sox6P40645 Gm25349-201ENSMUST00000177728 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm23616-201ENSMUST00000177797 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm25871-201ENSMUST00000177816 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm24752-201ENSMUST00000178240 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm24496-201ENSMUST00000178287 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm25649-201ENSMUST00000178476 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm25548-201ENSMUST00000178681 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm23147-201ENSMUST00000178841 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm26095-201ENSMUST00000179270 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm22171-201ENSMUST00000179283 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm23936-201ENSMUST00000179354 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm22619-201ENSMUST00000179516 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm25255-201ENSMUST00000179579 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm24755-201ENSMUST00000179691 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm26506-201ENSMUST00000179692 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm25086-201ENSMUST00000179931 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm23243-201ENSMUST00000180047 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm24659-201ENSMUST00000180212 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm24169-201ENSMUST00000180244 110 ntBASIC12.94□□□□□ -0.34
Sox6P40645 Gm23689-201ENSMUST00000180354 110 ntBASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms