Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Cdx1P18111 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC11.15□□□□□ -0.62
Cdx1P18111 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC11.15□□□□□ -0.62
Cdx1P18111 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Cdx1P18111 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC11.15□□□□□ -0.62
Cdx1P18111 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC11.15□□□□□ -0.62
Cdx1P18111 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC11.15□□□□□ -0.62
Cdx1P18111 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC11.15□□□□□ -0.62
Cdx1P18111 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC11.15□□□□□ -0.62
Cdx1P18111 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC11.15□□□□□ -0.62
Cdx1P18111 AC147366.1-201ENSMUST00000227671 852 ntBASIC11.15□□□□□ -0.62
Cdx1P18111 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
Cdx1P18111 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC11.15□□□□□ -0.62
Cdx1P18111 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC11.15□□□□□ -0.62
Cdx1P18111 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Cdx1P18111 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Cdx1P18111 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Cdx1P18111 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.63
Cdx1P18111 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Cdx1P18111 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Cdx1P18111 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC11.14□□□□□ -0.63
Cdx1P18111 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC11.14□□□□□ -0.63
Cdx1P18111 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Gm27494-201ENSMUST00000184735 189 ntBASIC11.14□□□□□ -0.63
Cdx1P18111 Gm7063-201ENSMUST00000186840 981 ntBASIC11.14□□□□□ -0.63
Cdx1P18111 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC11.14□□□□□ -0.63
Cdx1P18111 Gm44492-201ENSMUST00000197012 141 ntBASIC11.14□□□□□ -0.63
Cdx1P18111 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC11.14□□□□□ -0.63
Cdx1P18111 Gm44872-201ENSMUST00000207864 420 ntBASIC11.14□□□□□ -0.63
Cdx1P18111 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 AC124549.3-201ENSMUST00000225541 367 ntBASIC11.14□□□□□ -0.63
Cdx1P18111 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Cdx1P18111 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx1P18111 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx1P18111 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC11.13□□□□□ -0.63
Cdx1P18111 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Cdx1P18111 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx1P18111 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Cdx1P18111 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx1P18111 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx1P18111 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx1P18111 Gm43134-201ENSMUST00000199434 1886 ntBASIC11.13□□□□□ -0.63
Cdx1P18111 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx1P18111 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx1P18111 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC11.13□□□□□ -0.63
Cdx1P18111 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC11.13□□□□□ -0.63
Cdx1P18111 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx1P18111 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx1P18111 Gm27301-201ENSMUST00000184012 127 ntBASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms