Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Gm21451-201ENSMUST00000111062 2775 ntBASIC13.14□□□□□ -0.31
Msx1P13297 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC13.13□□□□□ -0.31
Msx1P13297 Gm9109-201ENSMUST00000120254 1405 ntBASIC13.13□□□□□ -0.31
Msx1P13297 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.13□□□□□ -0.31
Msx1P13297 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
Msx1P13297 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Msx1P13297 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC13.13□□□□□ -0.31
Msx1P13297 AA619741-201ENSMUST00000195095 646 ntBASIC13.13□□□□□ -0.31
Msx1P13297 AC166349.1-201ENSMUST00000220866 695 ntBASIC13.13□□□□□ -0.31
Msx1P13297 AC121804.3-201ENSMUST00000223420 295 ntBASIC13.13□□□□□ -0.31
Msx1P13297 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Msx1P13297 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Gm38102-201ENSMUST00000192791 1935 ntBASIC13.13□□□□□ -0.31
Msx1P13297 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Msx1P13297 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC13.13□□□□□ -0.31
Msx1P13297 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Msx1P13297 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Msx1P13297 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC13.12□□□□□ -0.31
Msx1P13297 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC13.12□□□□□ -0.31
Msx1P13297 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.12□□□□□ -0.31
Msx1P13297 Gm15957-201ENSMUST00000118893 974 ntBASIC13.12□□□□□ -0.31
Msx1P13297 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC13.12□□□□□ -0.31
Msx1P13297 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Msx1P13297 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Gm27892-201ENSMUST00000185017 106 ntBASIC13.12□□□□□ -0.31
Msx1P13297 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC13.12□□□□□ -0.31
Msx1P13297 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC13.12□□□□□ -0.31
Msx1P13297 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC13.12□□□□□ -0.31
Msx1P13297 AC121598.1-201ENSMUST00000228224 1019 ntBASIC13.12□□□□□ -0.31
Msx1P13297 Mir125a-201ENSMUST00000083545 68 ntBASIC13.12□□□□□ -0.31
Msx1P13297 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Msx1P13297 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Msx1P13297 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Msx1P13297 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Msx1P13297 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msx1P13297 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msx1P13297 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msx1P13297 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Msx1P13297 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Msx1P13297 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msx1P13297 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC13.11□□□□□ -0.31
Msx1P13297 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Msx1P13297 Gm12742-201ENSMUST00000117326 410 ntBASIC13.11□□□□□ -0.31
Msx1P13297 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC13.11□□□□□ -0.31
Msx1P13297 Gm8584-201ENSMUST00000171982 758 ntBASIC13.11□□□□□ -0.31
Msx1P13297 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC13.11□□□□□ -0.31
Msx1P13297 Gm27701-201ENSMUST00000184498 110 ntBASIC13.11□□□□□ -0.31
Msx1P13297 Gm44608-201ENSMUST00000206827 855 ntBASIC13.11□□□□□ -0.31
Msx1P13297 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.11□□□□□ -0.31
Msx1P13297 AC238811.3-201ENSMUST00000225422 709 ntBASIC13.11□□□□□ -0.31
Msx1P13297 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msx1P13297 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msx1P13297 BC001981-202ENSMUST00000191393 1545 ntBASIC13.11□□□□□ -0.31
Msx1P13297 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Msx1P13297 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msx1P13297 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.11□□□□□ -0.31
Msx1P13297 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msx1P13297 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms