Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Hmgb3O54879 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Hmgb3O54879 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
Hmgb3O54879 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Hmgb3O54879 Gm6944-201ENSMUST00000182449 1006 ntBASIC11.4□□□□□ -0.58
Hmgb3O54879 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 AC102291.3-201ENSMUST00000226566 405 ntBASIC11.4□□□□□ -0.58
Hmgb3O54879 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC11.4□□□□□ -0.58
Hmgb3O54879 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Hmgb3O54879 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Hmgb3O54879 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hmgb3O54879 Gm37861-201ENSMUST00000193534 2869 ntBASIC11.4□□□□□ -0.58
Hmgb3O54879 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Hmgb3O54879 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hmgb3O54879 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hmgb3O54879 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hmgb3O54879 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hmgb3O54879 Gm37795-201ENSMUST00000194216 2459 ntBASIC11.4□□□□□ -0.59
Hmgb3O54879 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 AC119177.1-201ENSMUST00000227647 1332 ntBASIC11.39□□□□□ -0.59
Hmgb3O54879 Scn8a-201ENSMUST00000082209 11293 ntAPPRIS ALT1 TSL 5 BASIC11.39□□□□□ -0.59
Hmgb3O54879 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Megf10-201ENSMUST00000075770 7514 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Gm25990-201ENSMUST00000102440 86 ntBASIC11.39□□□□□ -0.59
Hmgb3O54879 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Gm7222-201ENSMUST00000117512 906 ntBASIC11.39□□□□□ -0.59
Hmgb3O54879 Gm12020-201ENSMUST00000119030 2042 ntBASIC11.39□□□□□ -0.59
Hmgb3O54879 Gm15173-201ENSMUST00000122049 433 ntBASIC11.39□□□□□ -0.59
Hmgb3O54879 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Hmgb3O54879 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
Hmgb3O54879 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Gm4899-201ENSMUST00000178708 719 ntBASIC11.39□□□□□ -0.59
Hmgb3O54879 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC11.39□□□□□ -0.59
Hmgb3O54879 Gm9924-202ENSMUST00000192760 2311 ntBASIC11.39□□□□□ -0.59
Hmgb3O54879 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC11.39□□□□□ -0.59
Hmgb3O54879 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC11.39□□□□□ -0.59
Hmgb3O54879 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC11.39□□□□□ -0.59
Hmgb3O54879 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Spr-ps1-201ENSMUST00000089584 605 ntBASIC11.39□□□□□ -0.59
Hmgb3O54879 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Prdm16-205ENSMUST00000105637 8595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Prdm16-201ENSMUST00000030902 8598 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Hmgb3O54879 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Gm37133-201ENSMUST00000192705 1922 ntBASIC11.39□□□□□ -0.59
Hmgb3O54879 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hmgb3O54879 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC11.38□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 288 ms