Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ube3bQ9ES34 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ube3bQ9ES34 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Gm21451-201ENSMUST00000111062 2775 ntBASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 AC132467.2-202ENSMUST00000227726 559 ntBASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3bQ9ES34 Gm13730-201ENSMUST00000121036 1462 ntBASIC16.35■□□□□ 0.21
Ube3bQ9ES34 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Mir692-1-201ENSMUST00000102263 109 ntBASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Gm6244-201ENSMUST00000178732 841 ntBASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Gm27892-201ENSMUST00000185017 106 ntBASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Gm5276-201ENSMUST00000196683 1047 ntBASIC16.35■□□□□ 0.21
Ube3bQ9ES34 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 AL645783.1-201ENSMUST00000221416 1832 ntBASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3bQ9ES34 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Gm13886-201ENSMUST00000117876 1183 ntBASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Gm38144-201ENSMUST00000192790 465 ntBASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Gm7287-201ENSMUST00000205267 602 ntBASIC16.34■□□□□ 0.21
Ube3bQ9ES34 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Gm8775-201ENSMUST00000170943 1327 ntBASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3bQ9ES34 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Ube3bQ9ES34 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ube3bQ9ES34 Gm43056-201ENSMUST00000197865 2791 ntBASIC16.33■□□□□ 0.21
Ube3bQ9ES34 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC16.33■□□□□ 0.21
Ube3bQ9ES34 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ube3bQ9ES34 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3bQ9ES34 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3bQ9ES34 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3bQ9ES34 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3bQ9ES34 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3bQ9ES34 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
Ube3bQ9ES34 Mir1894-201ENSMUST00000122802 81 ntBASIC16.33■□□□□ 0.2
Ube3bQ9ES34 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms