Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 AC125206.2-201ENSMUST00000217454 574 ntBASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Gm37133-201ENSMUST00000192705 1922 ntBASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Gm24420-201ENSMUST00000176676 59 ntBASIC16.65■□□□□ 0.26
Brf1Q8CFK2 AC124732.1-201ENSMUST00000221551 910 ntBASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Gm9797-201ENSMUST00000052902 613 ntBASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Brf1Q8CFK2 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
Brf1Q8CFK2 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
Brf1Q8CFK2 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Gm18905-201ENSMUST00000205454 928 ntBASIC16.64■□□□□ 0.25
Brf1Q8CFK2 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Hist1h2al-201ENSMUST00000091708 339 ntBASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 AC168058.1-201ENSMUST00000219521 2282 ntBASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Brf1Q8CFK2 Gm38042-201ENSMUST00000191614 5208 ntBASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Gm22189-201ENSMUST00000103822 86 ntBASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms