Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gm21849-201ENSMUST00000191571 696 ntBASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Gm28678-201ENSMUST00000191593 696 ntBASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Gm20910-201ENSMUST00000193268 696 ntBASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Gm21871-201ENSMUST00000194621 696 ntBASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Dupd1-202ENSMUST00000224735 548 ntBASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Vps53Q8CCB4 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 AC155298.2-201ENSMUST00000225485 6226 ntBASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Gm6912-201ENSMUST00000117218 544 ntBASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Gm6222-201ENSMUST00000120787 396 ntBASIC16.07■□□□□ 0.16
Vps53Q8CCB4 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Gm25857-201ENSMUST00000082788 129 ntBASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Gm43399-201ENSMUST00000202546 2374 ntBASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Vps53Q8CCB4 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Gm9109-201ENSMUST00000120254 1405 ntBASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Gm27631-201ENSMUST00000184163 466 ntBASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Gm42612-201ENSMUST00000197986 623 ntBASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Gm43170-201ENSMUST00000199827 612 ntBASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps53Q8CCB4 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Ldb3-207ENSMUST00000227819 1499 ntBASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Gm22189-201ENSMUST00000103822 86 ntBASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Gm12091-201ENSMUST00000146791 830 ntBASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 AC121801.1-201ENSMUST00000225363 1899 ntBASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms