Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm5687-201ENSMUST00000118252 640 ntBASIC19.37■□□□□ 0.69
Usp47Q8BY87 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Gm6152-201ENSMUST00000151704 340 ntBASIC19.37■□□□□ 0.69
Usp47Q8BY87 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Gm24196-201ENSMUST00000179161 110 ntBASIC19.37■□□□□ 0.69
Usp47Q8BY87 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Gm37912-201ENSMUST00000191895 3076 ntBASIC19.36■□□□□ 0.69
Usp47Q8BY87 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Cdk7-205ENSMUST00000225990 1159 ntBASIC19.36■□□□□ 0.69
Usp47Q8BY87 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC19.36■□□□□ 0.69
Usp47Q8BY87 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp47Q8BY87 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm42929-201ENSMUST00000198374 1286 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Rn7sk-201ENSMUST00000083103 331 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm26315-201ENSMUST00000083890 321 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm9816-201ENSMUST00000122292 1414 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm12626-201ENSMUST00000117339 1983 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm12623-201ENSMUST00000119849 1983 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm10040-201ENSMUST00000080726 1662 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gm9755-201ENSMUST00000032981 1356 ntBASIC19.35■□□□□ 0.69
Usp47Q8BY87 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp47Q8BY87 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Gm8652-201ENSMUST00000181363 964 ntBASIC19.34■□□□□ 0.69
Usp47Q8BY87 Gm38144-201ENSMUST00000192790 465 ntBASIC19.34■□□□□ 0.69
Usp47Q8BY87 Gm17794-201ENSMUST00000220252 955 ntBASIC19.34■□□□□ 0.69
Usp47Q8BY87 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp47Q8BY87 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC19.33■□□□□ 0.69
Usp47Q8BY87 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC19.33■□□□□ 0.69
Usp47Q8BY87 Gm11803-201ENSMUST00000119966 444 ntBASIC19.33■□□□□ 0.69
Usp47Q8BY87 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC19.33■□□□□ 0.69
Usp47Q8BY87 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC19.33■□□□□ 0.69
Usp47Q8BY87 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Usp47Q8BY87 Proscos-202ENSMUST00000178990 666 ntBASIC19.33■□□□□ 0.69
Usp47Q8BY87 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms