Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Dctn4-202ENSMUST00000223590 1530 ntBASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC18.83■□□□□ 0.61
Usp40Q8BWR4 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp40Q8BWR4 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp40Q8BWR4 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Usp40Q8BWR4 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp40Q8BWR4 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Gm8565-201ENSMUST00000183259 1014 ntBASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Mir6420-201ENSMUST00000185032 102 ntBASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Gm29705-201ENSMUST00000212598 474 ntBASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 AC148324.1-201ENSMUST00000219034 4240 ntBASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC18.83■□□□□ 0.6
Usp40Q8BWR4 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Gm12203-201ENSMUST00000118235 598 ntBASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Gm12209-201ENSMUST00000120089 596 ntBASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Gm10478-201ENSMUST00000084451 396 ntBASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Gm15889-202ENSMUST00000212669 2443 ntBASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp40Q8BWR4 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Gm26513-201ENSMUST00000181802 2489 ntBASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Trav4d-2-201ENSMUST00000120914 335 ntBASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Gm17420-201ENSMUST00000164753 153 ntBASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp40Q8BWR4 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms