Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm30238-201ENSMUST00000195528 2603 ntBASIC16.26■□□□□ 0.19
Limch1Q3UH68 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Gm2420-202ENSMUST00000202224 2249 ntBASIC16.25■□□□□ 0.19
Limch1Q3UH68 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC16.25■□□□□ 0.19
Limch1Q3UH68 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Gm14127-201ENSMUST00000117906 678 ntBASIC16.25■□□□□ 0.19
Limch1Q3UH68 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Ighv1-25-201ENSMUST00000195638 345 ntBASIC16.25■□□□□ 0.19
Limch1Q3UH68 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 AC154239.3-201ENSMUST00000226933 674 ntBASIC16.25■□□□□ 0.19
Limch1Q3UH68 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Gm11405-201ENSMUST00000118689 1556 ntBASIC16.25■□□□□ 0.19
Limch1Q3UH68 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Limch1Q3UH68 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Il17rd-203ENSMUST00000225146 3366 ntBASIC16.24■□□□□ 0.19
Limch1Q3UH68 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Gm3436-201ENSMUST00000179930 840 ntBASIC16.24■□□□□ 0.19
Limch1Q3UH68 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Gm6916-202ENSMUST00000205523 195 ntBASIC16.24■□□□□ 0.19
Limch1Q3UH68 AC121804.3-201ENSMUST00000223420 295 ntBASIC16.24■□□□□ 0.19
Limch1Q3UH68 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Gm20445-201ENSMUST00000061905 565 ntBASIC16.24■□□□□ 0.19
Limch1Q3UH68 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC16.24■□□□□ 0.19
Limch1Q3UH68 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC16.24■□□□□ 0.19
Limch1Q3UH68 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Limch1Q3UH68 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Gm37714-201ENSMUST00000194742 342 ntBASIC16.23■□□□□ 0.19
Limch1Q3UH68 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC16.23■□□□□ 0.19
Limch1Q3UH68 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Limch1Q3UH68 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms