Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 AC125539.1-201ENSMUST00000227423 622 ntBASIC14.36□□□□□ -0.11
Rnf40Q3U319 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Gm18719-201ENSMUST00000196696 1413 ntBASIC14.35□□□□□ -0.11
Rnf40Q3U319 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Gm3149-203ENSMUST00000179649 618 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Gm21147-201ENSMUST00000186046 913 ntBASIC14.35□□□□□ -0.11
Rnf40Q3U319 Gm8597-201ENSMUST00000191525 1109 ntBASIC14.35□□□□□ -0.11
Rnf40Q3U319 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Gm18246-201ENSMUST00000221023 728 ntBASIC14.35□□□□□ -0.11
Rnf40Q3U319 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf40Q3U319 Hormad1-201ENSMUST00000029754 1385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.34□□□□□ -0.11
Rnf40Q3U319 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm9723-201ENSMUST00000192100 457 ntBASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.34□□□□□ -0.11
Rnf40Q3U319 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.34□□□□□ -0.11
Rnf40Q3U319 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf40Q3U319 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms