Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Gm9200-201ENSMUST00000118513 1354 ntBASIC11.91□□□□□ -0.5
Nkx3-1P97436 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Gm15371-201ENSMUST00000117057 784 ntBASIC11.9□□□□□ -0.5
Nkx3-1P97436 Trav4d-2-201ENSMUST00000120914 335 ntBASIC11.9□□□□□ -0.5
Nkx3-1P97436 Gm14730-201ENSMUST00000122378 1045 ntBASIC11.9□□□□□ -0.5
Nkx3-1P97436 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Mir6420-201ENSMUST00000185032 102 ntBASIC11.9□□□□□ -0.5
Nkx3-1P97436 Gm45784-201ENSMUST00000188360 142 ntBASIC11.9□□□□□ -0.5
Nkx3-1P97436 Gm7498-201ENSMUST00000203282 1084 ntBASIC11.9□□□□□ -0.5
Nkx3-1P97436 Gm6983-201ENSMUST00000214912 628 ntBASIC11.9□□□□□ -0.5
Nkx3-1P97436 AC121801.1-201ENSMUST00000225363 1899 ntBASIC11.9□□□□□ -0.5
Nkx3-1P97436 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Gm6091-201ENSMUST00000098307 165 ntBASIC11.9□□□□□ -0.5
Nkx3-1P97436 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Nkx3-1P97436 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Nkx3-1P97436 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Nkx3-1P97436 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Nkx3-1P97436 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Gm29649-201ENSMUST00000185649 419 ntBASIC11.89□□□□□ -0.51
Nkx3-1P97436 Gm29741-201ENSMUST00000192667 421 ntBASIC11.89□□□□□ -0.51
Nkx3-1P97436 Gm38671-201ENSMUST00000200573 130 ntBASIC11.89□□□□□ -0.51
Nkx3-1P97436 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 CT030704.2-201ENSMUST00000228887 494 ntBASIC11.89□□□□□ -0.51
Nkx3-1P97436 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Gm9347-201ENSMUST00000211473 1607 ntBASIC11.89□□□□□ -0.51
Nkx3-1P97436 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Nkx3-1P97436 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 AC161252.3-201ENSMUST00000225465 1549 ntBASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gm37297-201ENSMUST00000192974 2384 ntBASIC11.88□□□□□ -0.51
Nkx3-1P97436 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms