Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC11.28□□□□□ -0.6
Sdc1P18828 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC11.28□□□□□ -0.6
Sdc1P18828 Gm37153-201ENSMUST00000193637 231 ntBASIC11.28□□□□□ -0.6
Sdc1P18828 AL672049.1-201ENSMUST00000197943 91 ntBASIC11.28□□□□□ -0.6
Sdc1P18828 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC11.28□□□□□ -0.6
Sdc1P18828 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Sdc1P18828 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sdc1P18828 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Gm43061-201ENSMUST00000198850 2241 ntBASIC11.28□□□□□ -0.6
Sdc1P18828 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sdc1P18828 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sdc1P18828 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Sdc1P18828 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sdc1P18828 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sdc1P18828 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
Sdc1P18828 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Sdc1P18828 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sdc1P18828 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sdc1P18828 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sdc1P18828 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Sdc1P18828 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC11.27□□□□□ -0.61
Sdc1P18828 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Sdc1P18828 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Sdc1P18828 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Sdc1P18828 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Sdc1P18828 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Gm10275-202ENSMUST00000168697 495 ntBASIC11.27□□□□□ -0.61
Sdc1P18828 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 AC108846.1-201ENSMUST00000214531 513 ntBASIC11.27□□□□□ -0.61
Sdc1P18828 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC11.27□□□□□ -0.61
Sdc1P18828 Gm18246-201ENSMUST00000221023 728 ntBASIC11.27□□□□□ -0.61
Sdc1P18828 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC11.27□□□□□ -0.61
Sdc1P18828 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Gm10275-201ENSMUST00000092620 635 ntBASIC11.27□□□□□ -0.61
Sdc1P18828 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Sdc1P18828 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Sdc1P18828 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC11.27□□□□□ -0.61
Sdc1P18828 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Sdc1P18828 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sdc1P18828 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Sdc1P18828 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sdc1P18828 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
Sdc1P18828 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Sdc1P18828 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC11.26□□□□□ -0.61
Sdc1P18828 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sdc1P18828 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC11.26□□□□□ -0.61
Sdc1P18828 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sdc1P18828 Rnf17-202ENSMUST00000223627 2077 ntBASIC11.26□□□□□ -0.61
Sdc1P18828 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC11.26□□□□□ -0.61
Sdc1P18828 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC11.26□□□□□ -0.61
Sdc1P18828 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sdc1P18828 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms