Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Cdx1P18111 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
Cdx1P18111 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
Cdx1P18111 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Cdx1P18111 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Cdx1P18111 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Cdx1P18111 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdx1P18111 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Cdx1P18111 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Cdx1P18111 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC11.16□□□□□ -0.62
Cdx1P18111 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Cdx1P18111 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC11.16□□□□□ -0.62
Cdx1P18111 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC11.16□□□□□ -0.62
Cdx1P18111 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Gm14701-201ENSMUST00000117156 348 ntBASIC11.16□□□□□ -0.62
Cdx1P18111 Mir1895-201ENSMUST00000122615 79 ntBASIC11.16□□□□□ -0.62
Cdx1P18111 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC11.16□□□□□ -0.62
Cdx1P18111 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
Cdx1P18111 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC11.16□□□□□ -0.62
Cdx1P18111 Auts2-212ENSMUST00000178555 309 ntBASIC11.16□□□□□ -0.62
Cdx1P18111 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC11.16□□□□□ -0.62
Cdx1P18111 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC11.16□□□□□ -0.62
Cdx1P18111 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Gm8396-201ENSMUST00000057361 823 ntBASIC11.16□□□□□ -0.62
Cdx1P18111 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC11.16□□□□□ -0.62
Cdx1P18111 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Gm21009-201ENSMUST00000197169 1669 ntBASIC11.16□□□□□ -0.62
Cdx1P18111 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Cdx1P18111 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Gm4081-201ENSMUST00000195287 1838 ntBASIC11.16□□□□□ -0.62
Cdx1P18111 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
Cdx1P18111 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Cdx1P18111 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdx1P18111 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms