Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Gm27631-201ENSMUST00000184163 466 ntBASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Gm11405-201ENSMUST00000118689 1556 ntBASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Gm14767-201ENSMUST00000121559 586 ntBASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trim3Q9R1R2 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim3Q9R1R2 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Gm27680-201ENSMUST00000184192 160 ntBASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Gm45453-201ENSMUST00000211758 853 ntBASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Shd-206ENSMUST00000225145 998 ntBASIC13.02□□□□□ -0.33
Trim3Q9R1R2 AC149588.3-201ENSMUST00000227515 150 ntBASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms