Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Gm6916-202ENSMUST00000205523 195 ntBASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 AC149294.4-201ENSMUST00000227870 882 ntBASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC15.5■□□□□ 0.07
Ushbp1Q8R370 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Gm2445-201ENSMUST00000182798 989 ntBASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Ighv5-13-201ENSMUST00000193550 290 ntBASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Gm37714-201ENSMUST00000194742 342 ntBASIC15.5■□□□□ 0.07
Ushbp1Q8R370 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Gm18018-201ENSMUST00000198273 408 ntBASIC15.5■□□□□ 0.07
Ushbp1Q8R370 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ushbp1Q8R370 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Gm8602-201ENSMUST00000184045 607 ntBASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ushbp1Q8R370 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Gm9115-201ENSMUST00000120192 1348 ntBASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms