Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim47Q8C0E3 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim47Q8C0E3 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim47Q8C0E3 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim47Q8C0E3 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim47Q8C0E3 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Trim47Q8C0E3 AC161252.3-201ENSMUST00000225465 1549 ntBASIC15.32■□□□□ 0.04
Trim47Q8C0E3 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim47Q8C0E3 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trim47Q8C0E3 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim47Q8C0E3 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Gm13323-201ENSMUST00000120245 1151 ntBASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Gm2445-201ENSMUST00000182798 989 ntBASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Mir7654-201ENSMUST00000185082 70 ntBASIC15.31■□□□□ 0.04
Trim47Q8C0E3 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Gm7558-201ENSMUST00000193221 1165 ntBASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 AC167013.2-201ENSMUST00000228520 2684 ntBASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Gm13859-201ENSMUST00000119936 1423 ntBASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Gm15889-202ENSMUST00000212669 2443 ntBASIC15.31■□□□□ 0.04
Trim47Q8C0E3 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Gm15163-201ENSMUST00000120749 1302 ntBASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Gm45384-201ENSMUST00000210451 277 ntBASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 AC155258.1-201ENSMUST00000219303 253 ntBASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim47Q8C0E3 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Gm11524-201ENSMUST00000119349 807 ntBASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Gm45059-201ENSMUST00000205558 1077 ntBASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Gm18307-201ENSMUST00000206864 949 ntBASIC15.29■□□□□ 0.04
Trim47Q8C0E3 AC162801.1-201ENSMUST00000220612 198 ntBASIC15.29■□□□□ 0.04
Trim47Q8C0E3 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim47Q8C0E3 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms