Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Gm9728-201ENSMUST00000200197 1055 ntBASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Gm40466-201ENSMUST00000212174 422 ntBASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Gm43205-201ENSMUST00000198622 1968 ntBASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC18.88■□□□□ 0.61
Usp40Q8BWR4 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Gm27331-201ENSMUST00000183705 60 ntBASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Gm9755-201ENSMUST00000032981 1356 ntBASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp40Q8BWR4 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Gm42929-201ENSMUST00000198374 1286 ntBASIC18.86■□□□□ 0.61
Usp40Q8BWR4 AC126253.1-201ENSMUST00000227974 824 ntBASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
Usp40Q8BWR4 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Gm7553-201ENSMUST00000185805 1426 ntBASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Gm13886-201ENSMUST00000117876 1183 ntBASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Gm8213-201ENSMUST00000118191 441 ntBASIC18.85■□□□□ 0.61
Usp40Q8BWR4 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Nupl1-207ENSMUST00000225311 2475 ntBASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp40Q8BWR4 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Gm12384-201ENSMUST00000119228 919 ntBASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Gm42693-201ENSMUST00000196779 631 ntBASIC18.84■□□□□ 0.61
Usp40Q8BWR4 Gm43818-201ENSMUST00000200605 466 ntBASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms