Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Klk2-ps-201ENSMUST00000205342 571 ntBASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Gm27437-201ENSMUST00000183429 107 ntBASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC14.05□□□□□ -0.16
Sh3rf1Q69ZI1 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Gm13015-201ENSMUST00000118674 204 ntBASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Gm5866-201ENSMUST00000177881 973 ntBASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Gm27989-201ENSMUST00000184721 107 ntBASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Ighv8-7-201ENSMUST00000194349 297 ntBASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Gm37230-201ENSMUST00000194491 818 ntBASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Gm18049-201ENSMUST00000208909 581 ntBASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf1Q69ZI1 Gm12020-201ENSMUST00000119030 2042 ntBASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms