Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.22□□□□□ -0.13
Sox9Q04887 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC14.22□□□□□ -0.13
Sox9Q04887 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC14.22□□□□□ -0.13
Sox9Q04887 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC14.22□□□□□ -0.13
Sox9Q04887 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Gm4935-201ENSMUST00000221316 1198 ntBASIC14.22□□□□□ -0.13
Sox9Q04887 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Sox9Q04887 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.22□□□□□ -0.13
Sox9Q04887 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Sox9Q04887 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Sox9Q04887 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sox9Q04887 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Sox9Q04887 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Sox9Q04887 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC14.21□□□□□ -0.13
Sox9Q04887 Gm6023-201ENSMUST00000118217 606 ntBASIC14.21□□□□□ -0.13
Sox9Q04887 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.21□□□□□ -0.13
Sox9Q04887 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Sox9Q04887 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Sox9Q04887 Gm21769-201ENSMUST00000211922 111 ntBASIC14.21□□□□□ -0.13
Sox9Q04887 Gm29787-201ENSMUST00000222129 849 ntBASIC14.21□□□□□ -0.13
Sox9Q04887 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Sox9Q04887 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Sox9Q04887 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Sox9Q04887 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC14.21□□□□□ -0.13
Sox9Q04887 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC14.21□□□□□ -0.13
Sox9Q04887 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Sox9Q04887 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sox9Q04887 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Sox9Q04887 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sox9Q04887 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.21□□□□□ -0.14
Sox9Q04887 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sox9Q04887 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Sox9Q04887 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.21□□□□□ -0.14
Sox9Q04887 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Sox9Q04887 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.2□□□□□ -0.14
Sox9Q04887 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC14.2□□□□□ -0.14
Sox9Q04887 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC14.2□□□□□ -0.14
Sox9Q04887 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.2□□□□□ -0.14
Sox9Q04887 B9d1os-201ENSMUST00000137010 674 ntBASIC14.2□□□□□ -0.14
Sox9Q04887 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC14.2□□□□□ -0.14
Sox9Q04887 Gm37497-201ENSMUST00000195830 798 ntBASIC14.2□□□□□ -0.14
Sox9Q04887 Gm42997-202ENSMUST00000200321 985 ntBASIC14.2□□□□□ -0.14
Sox9Q04887 AU022133-201ENSMUST00000200601 873 ntBASIC14.2□□□□□ -0.14
Sox9Q04887 Abhd11os-203ENSMUST00000222613 363 ntBASIC14.2□□□□□ -0.14
Sox9Q04887 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.2□□□□□ -0.14
Sox9Q04887 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC14.2□□□□□ -0.14
Sox9Q04887 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
Sox9Q04887 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Sox9Q04887 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Sox9Q04887 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sox9Q04887 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sox9Q04887 Gm37736-201ENSMUST00000193564 2802 ntBASIC14.19□□□□□ -0.14
Sox9Q04887 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sox9Q04887 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms