Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC15.26■□□□□ 0.03
Col6a1Q04857 Gm43822-201ENSMUST00000200285 476 ntBASIC15.26■□□□□ 0.03
Col6a1Q04857 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC15.26■□□□□ 0.03
Col6a1Q04857 Gm18934-201ENSMUST00000216671 1044 ntBASIC15.26■□□□□ 0.03
Col6a1Q04857 Gm19309-201ENSMUST00000218295 205 ntBASIC15.26■□□□□ 0.03
Col6a1Q04857 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
Col6a1Q04857 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
Col6a1Q04857 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a1Q04857 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Col6a1Q04857 Gm38037-201ENSMUST00000192600 1624 ntBASIC15.25■□□□□ 0.03
Col6a1Q04857 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Col6a1Q04857 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.25■□□□□ 0.03
Col6a1Q04857 Gm13350-201ENSMUST00000120519 479 ntBASIC15.25■□□□□ 0.03
Col6a1Q04857 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC15.25■□□□□ 0.03
Col6a1Q04857 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Gm7584-201ENSMUST00000175829 940 ntBASIC15.25■□□□□ 0.03
Col6a1Q04857 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC15.25■□□□□ 0.03
Col6a1Q04857 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC15.25■□□□□ 0.03
Col6a1Q04857 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC15.25■□□□□ 0.03
Col6a1Q04857 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.25■□□□□ 0.03
Col6a1Q04857 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a1Q04857 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col6a1Q04857 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a1Q04857 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a1Q04857 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a1Q04857 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Gm15957-201ENSMUST00000118893 974 ntBASIC15.24■□□□□ 0.03
Col6a1Q04857 Gm12882-201ENSMUST00000121696 517 ntBASIC15.24■□□□□ 0.03
Col6a1Q04857 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a1Q04857 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a1Q04857 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Gm45880-201ENSMUST00000213041 853 ntBASIC15.24■□□□□ 0.03
Col6a1Q04857 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Gm24526-201ENSMUST00000082921 158 ntBASIC15.24■□□□□ 0.03
Col6a1Q04857 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col6a1Q04857 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a1Q04857 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a1Q04857 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC15.23■□□□□ 0.03
Col6a1Q04857 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Gm16177-201ENSMUST00000120728 718 ntBASIC15.23■□□□□ 0.03
Col6a1Q04857 Gm15376-201ENSMUST00000122258 783 ntBASIC15.23■□□□□ 0.03
Col6a1Q04857 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC15.23■□□□□ 0.03
Col6a1Q04857 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC15.23■□□□□ 0.03
Col6a1Q04857 Gm9823-201ENSMUST00000051212 327 ntBASIC15.23■□□□□ 0.03
Col6a1Q04857 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.23■□□□□ 0.03
Col6a1Q04857 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC15.23■□□□□ 0.03
Col6a1Q04857 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a1Q04857 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a1Q04857 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col6a1Q04857 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a1Q04857 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a1Q04857 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms