Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC13.08□□□□□ -0.32
Cdx2P43241 Gm27243-201ENSMUST00000183964 521 ntBASIC13.08□□□□□ -0.32
Cdx2P43241 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 Gm38266-201ENSMUST00000194931 421 ntBASIC13.08□□□□□ -0.32
Cdx2P43241 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC13.08□□□□□ -0.32
Cdx2P43241 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC13.08□□□□□ -0.32
Cdx2P43241 Gm3961-201ENSMUST00000204425 994 ntBASIC13.08□□□□□ -0.32
Cdx2P43241 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC13.08□□□□□ -0.32
Cdx2P43241 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
Cdx2P43241 Gm17823-201ENSMUST00000217830 1006 ntBASIC13.08□□□□□ -0.32
Cdx2P43241 Rn7sk-201ENSMUST00000083103 331 ntBASIC13.08□□□□□ -0.32
Cdx2P43241 Gm26315-201ENSMUST00000083890 321 ntBASIC13.08□□□□□ -0.32
Cdx2P43241 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Cdx2P43241 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Cdx2P43241 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 AC154412.1-201ENSMUST00000226540 2786 ntBASIC13.08□□□□□ -0.32
Cdx2P43241 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdx2P43241 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC13.07□□□□□ -0.32
Cdx2P43241 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Gm13369-201ENSMUST00000119442 987 ntBASIC13.07□□□□□ -0.32
Cdx2P43241 Gm11400-201ENSMUST00000120853 1214 ntBASIC13.07□□□□□ -0.32
Cdx2P43241 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC13.07□□□□□ -0.32
Cdx2P43241 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC13.07□□□□□ -0.32
Cdx2P43241 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC13.07□□□□□ -0.32
Cdx2P43241 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC13.07□□□□□ -0.32
Cdx2P43241 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Gm27501-201ENSMUST00000183599 107 ntBASIC13.07□□□□□ -0.32
Cdx2P43241 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC13.07□□□□□ -0.32
Cdx2P43241 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC13.07□□□□□ -0.32
Cdx2P43241 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Gm17870-201ENSMUST00000219489 1174 ntBASIC13.07□□□□□ -0.32
Cdx2P43241 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Cdx2P43241 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Cdx2P43241 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Cdx2P43241 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx2P43241 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Cdx2P43241 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC13.07□□□□□ -0.32
Cdx2P43241 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cdx2P43241 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Gm15770-201ENSMUST00000117498 584 ntBASIC13.06□□□□□ -0.32
Cdx2P43241 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC13.06□□□□□ -0.32
Cdx2P43241 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Gm4959-201ENSMUST00000197271 1044 ntBASIC13.06□□□□□ -0.32
Cdx2P43241 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC13.06□□□□□ -0.32
Cdx2P43241 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC13.06□□□□□ -0.32
Cdx2P43241 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Cdx2P43241 Gm17330-201ENSMUST00000221047 165 ntBASIC13.06□□□□□ -0.32
Cdx2P43241 AC133598.1-201ENSMUST00000224327 660 ntBASIC13.06□□□□□ -0.32
Cdx2P43241 AC140406.1-201ENSMUST00000226481 465 ntBASIC13.06□□□□□ -0.32
Cdx2P43241 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx2P43241 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms