Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Msx1P13297 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Gm37912-201ENSMUST00000191895 3076 ntBASIC13.19□□□□□ -0.3
Msx1P13297 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC13.18□□□□□ -0.3
Msx1P13297 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
Msx1P13297 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Xlr-203ENSMUST00000114810 984 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Gm4984-201ENSMUST00000115987 360 ntBASIC13.18□□□□□ -0.3
Msx1P13297 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Msx1P13297 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC13.18□□□□□ -0.3
Msx1P13297 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Msx1P13297 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Msx1P13297 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC13.18□□□□□ -0.3
Msx1P13297 Gm28722-201ENSMUST00000187630 1036 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Gm32877-201ENSMUST00000197419 709 ntTSL 5 BASIC13.18□□□□□ -0.3
Msx1P13297 CT009754.4-201ENSMUST00000221430 565 ntBASIC13.18□□□□□ -0.3
Msx1P13297 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Xlr-201ENSMUST00000067763 1032 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Gm10702-201ENSMUST00000098929 1268 ntBASIC13.18□□□□□ -0.3
Msx1P13297 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Msx1P13297 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC13.18□□□□□ -0.3
Msx1P13297 Gm6159-201ENSMUST00000191249 1724 ntBASIC13.18□□□□□ -0.3
Msx1P13297 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC13.18□□□□□ -0.3
Msx1P13297 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC13.18□□□□□ -0.3
Msx1P13297 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msx1P13297 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Msx1P13297 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC13.17□□□□□ -0.3
Msx1P13297 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Msx1P13297 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC13.17□□□□□ -0.3
Msx1P13297 Gm11425-201ENSMUST00000119608 498 ntBASIC13.17□□□□□ -0.3
Msx1P13297 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC13.17□□□□□ -0.3
Msx1P13297 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC13.17□□□□□ -0.3
Msx1P13297 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Msx1P13297 Olfr258-ps1-202ENSMUST00000218625 1085 ntTSL 5 BASIC13.17□□□□□ -0.3
Msx1P13297 AC140209.1-201ENSMUST00000227875 284 ntBASIC13.17□□□□□ -0.3
Msx1P13297 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Msx1P13297 Gm9396-201ENSMUST00000076703 567 ntBASIC13.17□□□□□ -0.3
Msx1P13297 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Msx1P13297 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Msx1P13297 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Msx1P13297 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Gm12960-201ENSMUST00000120017 1066 ntBASIC13.16□□□□□ -0.3
Msx1P13297 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC13.16□□□□□ -0.3
Msx1P13297 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC13.16□□□□□ -0.3
Msx1P13297 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Msx1P13297 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC13.16□□□□□ -0.3
Msx1P13297 Esp15-201ENSMUST00000178929 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC13.16□□□□□ -0.3
Msx1P13297 Gm28923-201ENSMUST00000187755 322 ntBASIC13.16□□□□□ -0.3
Msx1P13297 1700041M19Rik-202ENSMUST00000190908 1123 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms