Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm37542-201ENSMUST00000192563 2832 ntBASIC13.18□□□□□ -0.3
Lire1P11260 AC162938.1-201ENSMUST00000213140 2323 ntBASIC13.18□□□□□ -0.3
Lire1P11260 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.18□□□□□ -0.3
Lire1P11260 AC154767.3-201ENSMUST00000225150 1342 ntBASIC13.18□□□□□ -0.3
Lire1P11260 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
Lire1P11260 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC13.18□□□□□ -0.3
Lire1P11260 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC13.18□□□□□ -0.3
Lire1P11260 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC13.18□□□□□ -0.3
Lire1P11260 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC13.18□□□□□ -0.3
Lire1P11260 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC13.18□□□□□ -0.3
Lire1P11260 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC13.18□□□□□ -0.3
Lire1P11260 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC13.18□□□□□ -0.3
Lire1P11260 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Lire1P11260 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Lire1P11260 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Gm45011-201ENSMUST00000207620 2297 ntBASIC13.18□□□□□ -0.3
Lire1P11260 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lire1P11260 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.17□□□□□ -0.3
Lire1P11260 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Lire1P11260 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Lire1P11260 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Gm11543-201ENSMUST00000120758 370 ntBASIC13.17□□□□□ -0.3
Lire1P11260 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Lire1P11260 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC13.17□□□□□ -0.3
Lire1P11260 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC13.17□□□□□ -0.3
Lire1P11260 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Lire1P11260 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC13.17□□□□□ -0.3
Lire1P11260 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC13.17□□□□□ -0.3
Lire1P11260 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Lire1P11260 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lire1P11260 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC13.16□□□□□ -0.3
Lire1P11260 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 AC130669.1-201ENSMUST00000228537 1672 ntBASIC13.16□□□□□ -0.3
Lire1P11260 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Lire1P11260 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Gm23547-201ENSMUST00000158210 271 ntBASIC13.16□□□□□ -0.3
Lire1P11260 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lire1P11260 Gm27437-201ENSMUST00000183429 107 ntBASIC13.16□□□□□ -0.3
Lire1P11260 Gm27306-201ENSMUST00000183970 107 ntBASIC13.16□□□□□ -0.3
Lire1P11260 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC13.16□□□□□ -0.3
Lire1P11260 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC13.16□□□□□ -0.3
Lire1P11260 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms