Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC15.08■□□□□ 0
Chmp6P0C0A3 Gm27306-201ENSMUST00000183970 107 ntBASIC15.08■□□□□ 0
Chmp6P0C0A3 Mir8102-201ENSMUST00000184148 139 ntBASIC15.08■□□□□ 0
Chmp6P0C0A3 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC15.08■□□□□ 0
Chmp6P0C0A3 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC15.08■□□□□ 0
Chmp6P0C0A3 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC15.08■□□□□ 0
Chmp6P0C0A3 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Chmp6P0C0A3 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC15.08■□□□□ 0
Chmp6P0C0A3 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.07■□□□□ 0
Chmp6P0C0A3 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Ighv8-14-201ENSMUST00000196781 358 ntBASIC15.07■□□□□ 0
Chmp6P0C0A3 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Gm7775-201ENSMUST00000218871 853 ntBASIC15.07■□□□□ 0
Chmp6P0C0A3 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC15.07■□□□□ 0
Chmp6P0C0A3 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Chmp6P0C0A3 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Chmp6P0C0A3 Ssr1-204ENSMUST00000225319 1610 ntBASIC15.06■□□□□ 0
Chmp6P0C0A3 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC15.06■□□□□ 0
Chmp6P0C0A3 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC15.06■□□□□ 0
Chmp6P0C0A3 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Chmp6P0C0A3 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC15.06■□□□□ 0
Chmp6P0C0A3 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.06■□□□□ 0
Chmp6P0C0A3 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC15.06■□□□□ 0
Chmp6P0C0A3 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC15.06■□□□□ 0
Chmp6P0C0A3 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Gm45003-201ENSMUST00000205875 2158 ntBASIC15.06■□□□□ 0
Chmp6P0C0A3 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Chmp6P0C0A3 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Chmp6P0C0A3 Gm9109-201ENSMUST00000120254 1405 ntBASIC15.06■□□□□ 0
Chmp6P0C0A3 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
Chmp6P0C0A3 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Chmp6P0C0A3 Gm6159-201ENSMUST00000191249 1724 ntBASIC15.06■□□□□ 0
Chmp6P0C0A3 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Chmp6P0C0A3 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Chmp6P0C0A3 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Chmp6P0C0A3 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Chmp6P0C0A3 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Chmp6P0C0A3 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Chmp6P0C0A3 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Chmp6P0C0A3 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Chmp6P0C0A3 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms