Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC10.83□□□□□ -0.68
Hoxd3P09027 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
Hoxd3P09027 Gm11424-201ENSMUST00000121929 829 ntBASIC10.83□□□□□ -0.68
Hoxd3P09027 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC10.83□□□□□ -0.68
Hoxd3P09027 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Hoxd3P09027 9430065F17Rik-202ENSMUST00000180908 1084 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC10.83□□□□□ -0.68
Hoxd3P09027 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Hoxd3P09027 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC10.83□□□□□ -0.68
Hoxd3P09027 Rpp30-201ENSMUST00000025714 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Hoxd3P09027 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Hoxd3P09027 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Hoxd3P09027 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Hoxd3P09027 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Hoxd3P09027 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxd3P09027 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Olfr1397-ps1-201ENSMUST00000121388 962 ntBASIC10.82□□□□□ -0.68
Hoxd3P09027 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC10.82□□□□□ -0.68
Hoxd3P09027 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Gm15875-201ENSMUST00000152264 273 ntTSL 3 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Gm38170-201ENSMUST00000195404 816 ntBASIC10.82□□□□□ -0.68
Hoxd3P09027 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC10.82□□□□□ -0.68
Hoxd3P09027 AC139580.1-202ENSMUST00000223574 928 ntBASIC10.82□□□□□ -0.68
Hoxd3P09027 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Hoxd3P09027 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Hoxd3P09027 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxd3P09027 AC166574.6-201ENSMUST00000227889 1806 ntBASIC10.81□□□□□ -0.68
Hoxd3P09027 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Hoxd3P09027 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Hoxd3P09027 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Hoxd3P09027 Ssr1-204ENSMUST00000225319 1610 ntBASIC10.81□□□□□ -0.68
Hoxd3P09027 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Gm12702-201ENSMUST00000123258 612 ntTSL 3 BASIC10.81□□□□□ -0.68
Hoxd3P09027 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
Hoxd3P09027 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Gm5745-201ENSMUST00000183748 313 ntBASIC10.81□□□□□ -0.68
Hoxd3P09027 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxd3P09027 Gm28631-201ENSMUST00000190740 334 ntBASIC10.81□□□□□ -0.68
Hoxd3P09027 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC10.81□□□□□ -0.68
Hoxd3P09027 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC10.81□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms