Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.55□□□□□ -0.4
Lmx1bO88609 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Acot6-202ENSMUST00000222921 3622 ntBASIC12.55□□□□□ -0.4
Lmx1bO88609 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Gm37714-201ENSMUST00000194742 342 ntBASIC12.54□□□□□ -0.4
Lmx1bO88609 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Matn2-206ENSMUST00000228570 2798 ntBASIC12.54□□□□□ -0.4
Lmx1bO88609 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lmx1bO88609 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lmx1bO88609 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Gm42690-201ENSMUST00000197921 1836 ntBASIC12.53□□□□□ -0.4
Lmx1bO88609 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.53□□□□□ -0.4
Lmx1bO88609 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Gm45384-201ENSMUST00000210451 277 ntBASIC12.53□□□□□ -0.4
Lmx1bO88609 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Gm17795-201ENSMUST00000214505 757 ntBASIC12.53□□□□□ -0.4
Lmx1bO88609 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 AC154687.2-201ENSMUST00000223853 640 ntBASIC12.53□□□□□ -0.4
Lmx1bO88609 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.53□□□□□ -0.4
Lmx1bO88609 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC12.53□□□□□ -0.4
Lmx1bO88609 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Lmx1bO88609 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms