Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Erich3-202ENSMUST00000098496 8280 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Hmgb3O54879 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Hmgb3O54879 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Son-202ENSMUST00000114037 8399 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Gm15889-202ENSMUST00000212669 2443 ntBASIC11.45□□□□□ -0.58
Hmgb3O54879 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Hmgb3O54879 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Gm27357-201ENSMUST00000183754 135 ntBASIC11.45□□□□□ -0.58
Hmgb3O54879 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Gm43935-201ENSMUST00000203569 1050 ntBASIC11.45□□□□□ -0.58
Hmgb3O54879 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 AC159301.1-201ENSMUST00000225130 1182 ntBASIC11.45□□□□□ -0.58
Hmgb3O54879 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Hmgb3O54879 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC11.45□□□□□ -0.58
Hmgb3O54879 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Gm8096-201ENSMUST00000209921 1591 ntBASIC11.45□□□□□ -0.58
Hmgb3O54879 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 CT573086.2-201ENSMUST00000227277 4992 ntBASIC11.44□□□□□ -0.58
Hmgb3O54879 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Gm8597-201ENSMUST00000191525 1109 ntBASIC11.44□□□□□ -0.58
Hmgb3O54879 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hmgb3O54879 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC11.44□□□□□ -0.58
Hmgb3O54879 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 AL645745.1-201ENSMUST00000222202 5348 ntTSL 2 BASIC11.43□□□□□ -0.58
Hmgb3O54879 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC11.43□□□□□ -0.58
Hmgb3O54879 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Pdp2-201ENSMUST00000059588 5692 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC11.43□□□□□ -0.58
Hmgb3O54879 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Hmgb3O54879 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44357-201ENSMUST00000195897 142 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm19658-201ENSMUST00000196231 138 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44367-201ENSMUST00000196836 138 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44350-201ENSMUST00000197197 138 ntBASIC11.43□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 75.2 ms