Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Gm2383-201ENSMUST00000181461 807 ntBASIC16.15■□□□□ 0.18
Scn11aQ9R053 Gm44364-201ENSMUST00000198368 141 ntBASIC16.15■□□□□ 0.18
Scn11aQ9R053 AC140406.1-201ENSMUST00000226481 465 ntBASIC16.15■□□□□ 0.18
Scn11aQ9R053 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Gm11793-201ENSMUST00000120433 981 ntBASIC16.14■□□□□ 0.17
Scn11aQ9R053 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Tyms-ps-201ENSMUST00000219550 915 ntBASIC16.14■□□□□ 0.17
Scn11aQ9R053 Gm4935-201ENSMUST00000221316 1198 ntBASIC16.14■□□□□ 0.17
Scn11aQ9R053 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn11aQ9R053 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Gm11658-201ENSMUST00000120913 1008 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Gm2467-201ENSMUST00000182266 1010 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 Gm6981-201ENSMUST00000182467 1008 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 Gm43138-201ENSMUST00000199123 708 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 AC122305.4-201ENSMUST00000216159 1206 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 Gm19309-201ENSMUST00000218295 205 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 Gm2824-203ENSMUST00000226189 1228 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Gm37133-201ENSMUST00000192705 1922 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Gm43423-201ENSMUST00000198390 2094 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Mir433-201ENSMUST00000093564 124 ntBASIC16.13■□□□□ 0.17
Scn11aQ9R053 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn11aQ9R053 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Gm12384-201ENSMUST00000119228 919 ntBASIC16.12■□□□□ 0.17
Scn11aQ9R053 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms