Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cpsf3Q9QXK7 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Gm45668-201ENSMUST00000211271 493 ntBASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Gm18624-201ENSMUST00000220966 658 ntBASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Gm15823-201ENSMUST00000064305 670 ntBASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cpsf3Q9QXK7 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Gm8337-201ENSMUST00000187358 1938 ntBASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Gm27772-201ENSMUST00000184900 187 ntBASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 AC154687.2-201ENSMUST00000223853 640 ntBASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 AC154527.2-201ENSMUST00000225256 1466 ntBASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Gm37015-201ENSMUST00000192763 1521 ntBASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Cpsf3Q9QXK7 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Cpsf3Q9QXK7 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cpsf3Q9QXK7 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cpsf3Q9QXK7 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Cpsf3Q9QXK7 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cpsf3Q9QXK7 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Cpsf3Q9QXK7 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cpsf3Q9QXK7 Gm14928-201ENSMUST00000120198 477 ntBASIC14.85□□□□□ -0.03
Cpsf3Q9QXK7 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC14.85□□□□□ -0.03
Cpsf3Q9QXK7 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms