Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC14.99□□□□□ -0.01
Trim54Q9ERP3 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim54Q9ERP3 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim54Q9ERP3 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim54Q9ERP3 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim54Q9ERP3 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim54Q9ERP3 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim54Q9ERP3 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 AC114008.2-201ENSMUST00000227699 1347 ntBASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Gm37015-201ENSMUST00000192763 1521 ntBASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Gm26464-201ENSMUST00000157094 305 ntBASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 AC153962.4-201ENSMUST00000217878 242 ntBASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 AL645783.1-201ENSMUST00000221416 1832 ntBASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Gm9347-201ENSMUST00000211473 1607 ntBASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
Trim54Q9ERP3 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Gm13689-201ENSMUST00000119360 685 ntBASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Gm17794-201ENSMUST00000220252 955 ntBASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.97□□□□□ -0.01
Trim54Q9ERP3 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Gm37411-201ENSMUST00000194180 2282 ntBASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Gm12390-201ENSMUST00000117897 397 ntBASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC14.96□□□□□ -0.01
Trim54Q9ERP3 Gm8463-201ENSMUST00000208573 613 ntBASIC14.96□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms