Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Gm37133-201ENSMUST00000192705 1922 ntBASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ddx56Q9D0R4 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Gm38577-201ENSMUST00000221531 4545 ntBASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Gm9063-201ENSMUST00000223299 582 ntBASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ddx56Q9D0R4 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Gm11557-201ENSMUST00000120200 1008 ntBASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Gm8927-201ENSMUST00000181978 981 ntBASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Gm44719-201ENSMUST00000206404 149 ntBASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Gm3222-201ENSMUST00000071282 990 ntBASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Gm8337-201ENSMUST00000187358 1938 ntBASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Ddx56Q9D0R4 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms