Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Smc1aQ9CU62 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Smc1aQ9CU62 Gm3365-201ENSMUST00000216296 1480 ntBASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Gm24543-201ENSMUST00000103867 82 ntBASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Gm9719-201ENSMUST00000162765 543 ntBASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smc1aQ9CU62 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smc1aQ9CU62 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 AC090659.2-201ENSMUST00000225378 1186 ntBASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smc1aQ9CU62 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Gm5566-201ENSMUST00000116118 459 ntBASIC15.5■□□□□ 0.07
Smc1aQ9CU62 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC15.5■□□□□ 0.07
Smc1aQ9CU62 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Smc1aQ9CU62 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Smc1aQ9CU62 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.49■□□□□ 0.07
Smc1aQ9CU62 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC15.49■□□□□ 0.07
Smc1aQ9CU62 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Smc1aQ9CU62 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Smc1aQ9CU62 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms