Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Gm13392-201ENSMUST00000117708 150 ntBASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Gm16177-201ENSMUST00000120728 718 ntBASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Gm45841-201ENSMUST00000207700 164 ntBASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Gm6007-201ENSMUST00000208170 823 ntBASIC18.91■□□□□ 0.62
Usp40Q8BWR4 AC155237.1-201ENSMUST00000226196 1279 ntBASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Usp40Q8BWR4 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Gm10156-201ENSMUST00000122364 462 ntBASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Gm8062-201ENSMUST00000139696 444 ntBASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Itm2b-204ENSMUST00000228637 783 ntBASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Usp40Q8BWR4 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Usp40Q8BWR4 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Usp40Q8BWR4 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
Usp40Q8BWR4 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
Usp40Q8BWR4 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Gm23931-201ENSMUST00000103842 109 ntBASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Gm38144-201ENSMUST00000192790 465 ntBASIC18.89■□□□□ 0.61
Usp40Q8BWR4 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Rn7sk-201ENSMUST00000083103 331 ntBASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Gm26315-201ENSMUST00000083890 321 ntBASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp40Q8BWR4 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms