Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ift88Q61371 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ift88Q61371 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Ift88Q61371 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ift88Q61371 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC15.34■□□□□ 0.05
Ift88Q61371 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ift88Q61371 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC15.34■□□□□ 0.05
Ift88Q61371 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ift88Q61371 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC15.33■□□□□ 0.05
Ift88Q61371 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Ift88Q61371 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ift88Q61371 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.33■□□□□ 0.05
Ift88Q61371 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ift88Q61371 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Ift88Q61371 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 Gm13015-201ENSMUST00000118674 204 ntBASIC15.33■□□□□ 0.04
Ift88Q61371 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC15.33■□□□□ 0.04
Ift88Q61371 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC15.33■□□□□ 0.04
Ift88Q61371 Gm18049-201ENSMUST00000208909 581 ntBASIC15.33■□□□□ 0.04
Ift88Q61371 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.33■□□□□ 0.04
Ift88Q61371 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
Ift88Q61371 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Ift88Q61371 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC15.33■□□□□ 0.04
Ift88Q61371 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Ift88Q61371 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ift88Q61371 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Ift88Q61371 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC15.32■□□□□ 0.04
Ift88Q61371 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Gm12500-202ENSMUST00000186471 2428 ntBASIC15.32■□□□□ 0.04
Ift88Q61371 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 H2af-ps-201ENSMUST00000119066 295 ntBASIC15.32■□□□□ 0.04
Ift88Q61371 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.32■□□□□ 0.04
Ift88Q61371 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC15.32■□□□□ 0.04
Ift88Q61371 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC15.32■□□□□ 0.04
Ift88Q61371 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Ift88Q61371 Gm43073-201ENSMUST00000198200 1189 ntBASIC15.32■□□□□ 0.04
Ift88Q61371 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Mir125a-201ENSMUST00000083545 68 ntBASIC15.32■□□□□ 0.04
Ift88Q61371 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Ift88Q61371 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC15.32■□□□□ 0.04
Ift88Q61371 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Ift88Q61371 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
Ift88Q61371 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ift88Q61371 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Ift88Q61371 Zkscan14-203ENSMUST00000198959 2243 ntBASIC15.31■□□□□ 0.04
Ift88Q61371 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC15.31■□□□□ 0.04
Ift88Q61371 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC15.31■□□□□ 0.04
Ift88Q61371 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Gm18041-201ENSMUST00000218210 618 ntBASIC15.31■□□□□ 0.04
Ift88Q61371 AC149294.4-201ENSMUST00000227870 882 ntBASIC15.31■□□□□ 0.04
Ift88Q61371 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Gm37844-201ENSMUST00000192473 4097 ntBASIC15.31■□□□□ 0.04
Ift88Q61371 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ift88Q61371 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Ift88Q61371 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Ift88Q61371 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Ift88Q61371 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ift88Q61371 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ift88Q61371 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ift88Q61371 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ift88Q61371 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ift88Q61371 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.3■□□□□ 0.04
Ift88Q61371 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC15.3■□□□□ 0.04
Ift88Q61371 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms