Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
ClpbQ60649 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
ClpbQ60649 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
ClpbQ60649 Gm3436-201ENSMUST00000179930 840 ntBASIC13.32□□□□□ -0.28
ClpbQ60649 Gm5626-201ENSMUST00000222151 1058 ntBASIC13.32□□□□□ -0.28
ClpbQ60649 AC121804.3-201ENSMUST00000223420 295 ntBASIC13.32□□□□□ -0.28
ClpbQ60649 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
ClpbQ60649 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
ClpbQ60649 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
ClpbQ60649 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC13.32□□□□□ -0.28
ClpbQ60649 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
ClpbQ60649 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
ClpbQ60649 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ClpbQ60649 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.31□□□□□ -0.28
ClpbQ60649 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Gm12882-201ENSMUST00000121696 517 ntBASIC13.31□□□□□ -0.28
ClpbQ60649 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 AC125206.2-201ENSMUST00000217454 574 ntBASIC13.31□□□□□ -0.28
ClpbQ60649 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 Gm9229-201ENSMUST00000222777 126 ntBASIC13.31□□□□□ -0.28
ClpbQ60649 AC121598.1-201ENSMUST00000228224 1019 ntBASIC13.31□□□□□ -0.28
ClpbQ60649 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Gm15889-202ENSMUST00000212669 2443 ntBASIC13.31□□□□□ -0.28
ClpbQ60649 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
ClpbQ60649 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
ClpbQ60649 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC13.3□□□□□ -0.28
ClpbQ60649 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 BC001981-202ENSMUST00000191393 1545 ntBASIC13.3□□□□□ -0.28
ClpbQ60649 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
ClpbQ60649 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
ClpbQ60649 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
ClpbQ60649 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC13.3□□□□□ -0.28
ClpbQ60649 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Gm27838-201ENSMUST00000184829 128 ntBASIC13.3□□□□□ -0.28
ClpbQ60649 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ClpbQ60649 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
ClpbQ60649 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.3□□□□□ -0.28
ClpbQ60649 AC156016.3-201ENSMUST00000228623 344 ntBASIC13.3□□□□□ -0.28
ClpbQ60649 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms