Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Gm5425-201ENSMUST00000214125 459 ntBASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 AC132863.2-201ENSMUST00000226643 799 ntBASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Mir497b-201ENSMUST00000093601 125 ntBASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Upf3bQ3ULL6 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Upf3bQ3ULL6 Gm45779-201ENSMUST00000212189 4064 ntBASIC14.83□□□□□ -0.03
Upf3bQ3ULL6 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Upf3bQ3ULL6 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Upf3bQ3ULL6 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Upf3bQ3ULL6 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Gm15889-202ENSMUST00000212669 2443 ntBASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Gm9522-201ENSMUST00000182394 926 ntBASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Gm29667-201ENSMUST00000190817 490 ntBASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Wdyhv1-203ENSMUST00000226889 394 ntBASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Gm20445-201ENSMUST00000061905 565 ntBASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Upf3bQ3ULL6 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Gm11557-201ENSMUST00000120200 1008 ntBASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Gm8927-201ENSMUST00000181978 981 ntBASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Gm3222-201ENSMUST00000071282 990 ntBASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Gm6263-201ENSMUST00000120029 1342 ntBASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC14.82□□□□□ -0.04
Upf3bQ3ULL6 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 AC166491.1-201ENSMUST00000227053 2308 ntBASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms