Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 AC154725.1-201ENSMUST00000224826 1961 ntBASIC14.42□□□□□ -0.1
Rnf40Q3U319 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Pck2-205ENSMUST00000226352 2784 ntBASIC14.41□□□□□ -0.1
Rnf40Q3U319 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Rnf40Q3U319 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.41□□□□□ -0.1
Rnf40Q3U319 Gm23634-201ENSMUST00000175071 91 ntBASIC14.41□□□□□ -0.1
Rnf40Q3U319 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
Rnf40Q3U319 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 AC159106.1-201ENSMUST00000224421 690 ntBASIC14.41□□□□□ -0.1
Rnf40Q3U319 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 4933400A11Rik-201ENSMUST00000068874 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 4933400A11Rik-202ENSMUST00000068894 1217 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 AC116503.1-201ENSMUST00000215445 2192 ntBASIC14.41□□□□□ -0.1
Rnf40Q3U319 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC14.41□□□□□ -0.1
Rnf40Q3U319 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Rnf40Q3U319 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC14.4□□□□□ -0.1
Rnf40Q3U319 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Gm13333-201ENSMUST00000119424 781 ntBASIC14.4□□□□□ -0.1
Rnf40Q3U319 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Gm37230-201ENSMUST00000194491 818 ntBASIC14.4□□□□□ -0.1
Rnf40Q3U319 Olfr258-ps1-202ENSMUST00000218625 1085 ntTSL 5 BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnf40Q3U319 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 AC164565.1-201ENSMUST00000217520 1484 ntBASIC14.39□□□□□ -0.11
Rnf40Q3U319 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC14.39□□□□□ -0.11
Rnf40Q3U319 4933405E24Rik-201ENSMUST00000131019 1078 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Tbata-209ENSMUST00000148181 1017 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Gm38188-201ENSMUST00000192879 856 ntBASIC14.39□□□□□ -0.11
Rnf40Q3U319 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.39□□□□□ -0.11
Rnf40Q3U319 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.39□□□□□ -0.11
Rnf40Q3U319 AC131690.1-201ENSMUST00000218406 374 ntBASIC14.39□□□□□ -0.11
Rnf40Q3U319 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms