Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Sorbs3-204ENSMUST00000227929 2460 ntBASIC11.96□□□□□ -0.5
Nkx3-1P97436 Gm37015-201ENSMUST00000192763 1521 ntBASIC11.96□□□□□ -0.5
Nkx3-1P97436 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Nkx3-1P97436 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 AC131068.2-201ENSMUST00000226175 1453 ntBASIC11.95□□□□□ -0.5
Nkx3-1P97436 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Mup-ps23-201ENSMUST00000118063 630 ntBASIC11.95□□□□□ -0.5
Nkx3-1P97436 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm26464-201ENSMUST00000157094 305 ntBASIC11.95□□□□□ -0.5
Nkx3-1P97436 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC11.95□□□□□ -0.5
Nkx3-1P97436 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC11.95□□□□□ -0.5
Nkx3-1P97436 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm7287-201ENSMUST00000205267 602 ntBASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm6007-201ENSMUST00000208170 823 ntBASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Gm10710-201ENSMUST00000047876 3971 ntBASIC11.95□□□□□ -0.5
Nkx3-1P97436 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Nkx3-1P97436 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Gm45630-201ENSMUST00000210243 1911 ntBASIC11.94□□□□□ -0.5
Nkx3-1P97436 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC11.94□□□□□ -0.5
Nkx3-1P97436 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Gm12957-201ENSMUST00000117835 377 ntBASIC11.94□□□□□ -0.5
Nkx3-1P97436 Gm13689-201ENSMUST00000119360 685 ntBASIC11.94□□□□□ -0.5
Nkx3-1P97436 Gm11814-201ENSMUST00000119515 929 ntBASIC11.94□□□□□ -0.5
Nkx3-1P97436 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Gm38230-201ENSMUST00000193572 1159 ntBASIC11.94□□□□□ -0.5
Nkx3-1P97436 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Mir497b-201ENSMUST00000093601 125 ntBASIC11.94□□□□□ -0.5
Nkx3-1P97436 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Gm45546-201ENSMUST00000211053 2394 ntBASIC11.94□□□□□ -0.5
Nkx3-1P97436 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms