Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Msx1P13297 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Msx1P13297 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Msx1P13297 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Msx1P13297 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Msx1P13297 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Msx1P13297 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Msx1P13297 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
Msx1P13297 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.3
Msx1P13297 Gm18719-201ENSMUST00000196696 1413 ntBASIC13.21□□□□□ -0.3
Msx1P13297 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Msx1P13297 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Msx1P13297 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Msx1P13297 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Msx1P13297 Ssr1-204ENSMUST00000225319 1610 ntBASIC13.21□□□□□ -0.3
Msx1P13297 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Gm45657-201ENSMUST00000211318 1349 ntBASIC13.2□□□□□ -0.3
Msx1P13297 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Msx1P13297 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
Msx1P13297 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC13.2□□□□□ -0.3
Msx1P13297 Gm13333-201ENSMUST00000119424 781 ntBASIC13.2□□□□□ -0.3
Msx1P13297 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Gm9002-201ENSMUST00000178437 499 ntBASIC13.2□□□□□ -0.3
Msx1P13297 Mir6392-201ENSMUST00000184924 108 ntBASIC13.2□□□□□ -0.3
Msx1P13297 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC13.2□□□□□ -0.3
Msx1P13297 AY702102-202ENSMUST00000194651 1173 ntBASIC13.2□□□□□ -0.3
Msx1P13297 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 AC079680.1-201ENSMUST00000218730 649 ntTSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 AC165157.4-201ENSMUST00000220587 139 ntBASIC13.2□□□□□ -0.3
Msx1P13297 AC125539.1-201ENSMUST00000227423 622 ntBASIC13.2□□□□□ -0.3
Msx1P13297 AC149588.3-201ENSMUST00000227515 150 ntBASIC13.2□□□□□ -0.3
Msx1P13297 AC156016.3-201ENSMUST00000228623 344 ntBASIC13.2□□□□□ -0.3
Msx1P13297 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC13.2□□□□□ -0.3
Msx1P13297 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.2□□□□□ -0.3
Msx1P13297 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Msx1P13297 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msx1P13297 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
Msx1P13297 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Msx1P13297 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Msx1P13297 Gm7820-201ENSMUST00000121012 1052 ntBASIC13.19□□□□□ -0.3
Msx1P13297 Gm12882-201ENSMUST00000121696 517 ntBASIC13.19□□□□□ -0.3
Msx1P13297 4933416E03Rik-201ENSMUST00000133091 1126 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Gm29013-201ENSMUST00000187431 237 ntBASIC13.19□□□□□ -0.3
Msx1P13297 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC13.19□□□□□ -0.3
Msx1P13297 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Msx1P13297 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Msx1P13297 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Gm10478-201ENSMUST00000084451 396 ntBASIC13.19□□□□□ -0.3
Msx1P13297 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msx1P13297 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms