Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Nr1i3O35627 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC14.9□□□□□ -0.02
Nr1i3O35627 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
Nr1i3O35627 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.9□□□□□ -0.02
Nr1i3O35627 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC14.9□□□□□ -0.02
Nr1i3O35627 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Nr1i3O35627 Gm24513-201ENSMUST00000174964 138 ntBASIC14.9□□□□□ -0.02
Nr1i3O35627 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Nr1i3O35627 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Nr1i3O35627 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1i3O35627 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Gm27397-201ENSMUST00000184997 107 ntBASIC14.89□□□□□ -0.03
Nr1i3O35627 Gm21470-201ENSMUST00000187680 696 ntBASIC14.89□□□□□ -0.03
Nr1i3O35627 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Rubie-203ENSMUST00000227803 2430 ntBASIC14.89□□□□□ -0.03
Nr1i3O35627 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1i3O35627 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Nr1i3O35627 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Nr1i3O35627 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
Nr1i3O35627 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Nr1i3O35627 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC14.88□□□□□ -0.03
Nr1i3O35627 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
Nr1i3O35627 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC14.88□□□□□ -0.03
Nr1i3O35627 Gm4804-201ENSMUST00000182234 999 ntBASIC14.88□□□□□ -0.03
Nr1i3O35627 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.88□□□□□ -0.03
Nr1i3O35627 Gm5779-201ENSMUST00000218467 910 ntBASIC14.88□□□□□ -0.03
Nr1i3O35627 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Nr1i3O35627 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Nr1i3O35627 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Nr1i3O35627 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC14.88□□□□□ -0.03
Nr1i3O35627 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1i3O35627 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms