Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Gm13223-201ENSMUST00000118609 747 ntBASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 AC102291.3-201ENSMUST00000226566 405 ntBASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trim3Q9R1R2 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC13.08□□□□□ -0.31
Trim3Q9R1R2 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
Trim3Q9R1R2 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Trim3Q9R1R2 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Trim3Q9R1R2 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Trim3Q9R1R2 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Gm10275-202ENSMUST00000168697 495 ntBASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Gm38294-201ENSMUST00000192831 381 ntBASIC13.08□□□□□ -0.32
Trim3Q9R1R2 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Gm10275-201ENSMUST00000092620 635 ntBASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Gm6159-201ENSMUST00000191249 1724 ntBASIC13.08□□□□□ -0.32
Trim3Q9R1R2 Gm38102-201ENSMUST00000192791 1935 ntBASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Gm13453-201ENSMUST00000118708 357 ntBASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Gm17837-201ENSMUST00000186435 985 ntBASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Gm20949-201ENSMUST00000206478 952 ntBASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms