Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdc40Q9DC48 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Gm4875-201ENSMUST00000118257 786 ntBASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Gm15653-201ENSMUST00000119247 907 ntBASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Gm45453-201ENSMUST00000211758 853 ntBASIC12.91□□□□□ -0.34
Cdc40Q9DC48 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Gm6218-201ENSMUST00000219812 628 ntBASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Gm16476-201ENSMUST00000221544 139 ntBASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 AC159649.2-201ENSMUST00000222984 3223 ntBASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC12.91□□□□□ -0.34
Cdc40Q9DC48 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Gm6473-201ENSMUST00000188572 1210 ntBASIC12.9□□□□□ -0.34
Cdc40Q9DC48 AA619741-201ENSMUST00000195095 646 ntBASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Gm20445-201ENSMUST00000061905 565 ntBASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms