Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Ushbp1Q8R370 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Ushbp1Q8R370 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Ushbp1Q8R370 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Gm12138-201ENSMUST00000122180 951 ntBASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ushbp1Q8R370 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm11478-201ENSMUST00000117851 599 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm4875-201ENSMUST00000118257 786 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm8515-201ENSMUST00000194852 576 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm45384-201ENSMUST00000210451 277 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm46209-201ENSMUST00000217912 553 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm16476-201ENSMUST00000221544 139 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Dupd1-202ENSMUST00000224735 548 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Gm19863-201ENSMUST00000192480 2218 ntBASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ushbp1Q8R370 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Gm45546-201ENSMUST00000211053 2394 ntBASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 CT030704.2-201ENSMUST00000228887 494 ntBASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Gm20445-201ENSMUST00000061905 565 ntBASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ushbp1Q8R370 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms