Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm9131-201ENSMUST00000193557 1089 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm9121-201ENSMUST00000193749 1071 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm9299-201ENSMUST00000206392 1140 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
Usp40Q8BWR4 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Gm5687-201ENSMUST00000118252 640 ntBASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Gm24644-201ENSMUST00000157114 139 ntBASIC18.95■□□□□ 0.62
Usp40Q8BWR4 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp40Q8BWR4 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Gm15770-201ENSMUST00000117498 584 ntBASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Gm8810-201ENSMUST00000172895 754 ntBASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Gm38058-201ENSMUST00000194323 4368 ntBASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
Usp40Q8BWR4 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Gm22331-201ENSMUST00000158066 136 ntBASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Snora78-201ENSMUST00000158630 128 ntBASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Gm37424-201ENSMUST00000191727 561 ntBASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp40Q8BWR4 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp40Q8BWR4 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 86.6 ms